Caltech Fly Labs and a Century of Genetic Discovery

Fruit fly Drosophila melanogaster

Few organisms in the history of science have been as important to our understanding of life as the humble fruit fly. The genus Drosophila melanogaster holds a particularly esteemed spot among the dozens of model organisms that provide insight into lifeโ€™s inner workings. For more than 100 years, this tiny, but formidable creature has allowed scientists to unwind the infinitesimal mechanisms that make every living creature on the planet what it is.

And much of the work to understand the fruit fly has taken place and is taking place now, right here in California at the Cal Tech fly labs.

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Over the decades, Drosophila have been key in studying brain, behavior, development, flight mechanics, genetics, and more in many labs across the globe. These tiny, round-bodied, (usually) red-eyed flies might appear irrelevant, but their simplicity makes them ideal models. They’re easy to breedโ€”mix males and females in a test tube, and in 10 days, you have new flies. Their 14,000-gene DNA sequence is relatively short, but extremely well-studied and there are some 8,000 genes which have human analogs. (The fly’s entire genome was fully sequenced in 2000.) Crucially, a century of fruit fly research, much of it led by Caltech, has produced genetic tools for precise genome manipulation and shed light on the act of flight itself.

But how did Drosophila become the darling of genetics?

In the early 20th century, the field of genetics was still in its infancy. Thomas Hunt Morgan, a biologist at Columbia University with a background in embryology and a penchant for skepticism began with an effort to find a simple, cheap, easy-to-breed model organism. At Columbia, he established a laboratory in room 613 of Schermerhorn Hall. This cramped space became famous for groundbreaking research in genetics, with Morgan making innovative use of the common fruit fly.

Thomas Hunt Morgan in the Fly Room at Columbia, 1922 (Cal Tech Archives)

Morgan, who joined Columbia University after teaching at Bryn Mawr College, chose the fruit fly for its ease of breeding and rapid reproduction cycle. Morgan observed a male fly with white eyes instead of the usual red. Curious about this trait’s inheritance, he conducted breeding experiments and discovered that eye color is linked to the X chromosome. He realized a male fly, with one X and one Y chromosome, inherits the white-eye trait from its mother, who provides the X chromosome. This led him to conclude that other traits might also be linked to chromosomes. His extensive experiments in this lab confirmed the chromosomal theory of inheritance, demonstrating that genes are located on chromosomes and that some genes are linked and inherited together.

After his groundbreaking research in genetics at Columbia University, Morgan moved to Pasadena and joined the faculty at CalTech in 1928, where he became the first chairman of its Biology Division and continued his influential work in the field of genetics establishing a strong genetics research program. Morgan’s work, supported by notable students like Alfred Sturtevant and Hermann Muller, laid the foundation for modern genetics and earned him the Nobel Prize in 1933.

CalTech then became a world center for genetics research using the fruit fly. Other notable names involved in fruit fly research at CalTech include Ed Lewis, a student of Morgan, who focused his research on the bithorax complex, a cluster of genes responsible for the development of body segments in Drosophila. His meticulous work over several decades revealed the existence of homeotic and Hox genes, which control the basic body plan of an organism (for which he won the 1995 Nobel Prize).

Novel prize winner Edward Lewis (Nobel Prize.org)

Seymour Benzer, another luminary at CalTech, shifted the focus from genes to behavior. Benzer’s innovative experiments in the 1960s and 1970s sought to understand how genes influence behavior. His work demonstrated that mutations in specific genes could affect circadian rhythms, courtship behaviors, and learning in fruit flies. Benzer’s approach was revolutionary, merging genetics with neurobiology and opening new avenues for exploring the genetic basis of behavior. His contributions are chronicled in Jonathan Weiner’s “Time, Love, Memory: A Great Biologist and His Quest for the Origins of Behavior,” a riveting account of Benzer’s quest to uncover the genetic roots of behavior. Lewis Wolpert in his review for the New York Times wrote, “Benzer has many gifts beyond cleverness. He has that special imagination and view of the world that makes a great scientist.”

Since Benzer’s retirement in 1991, new vanguard in genetics research has taken over at CalTech, which continues to be at the forefront of scientific discovery, driven by a new generation of researchers who are unraveling the complexities of the brain and behavior with unprecedented precision.

Elizabeth Hong is a rising star in biology, with her Hong lab investigating how the brain orders and encodes complex odors. Her research focuses on the olfactory system of Drosophila, which, despite its simplicity, shares many features with the olfactory systems of more complex organisms. Hong’s work involves mapping the synapses and neural circuits that process olfactory information, seeking to understand how different odors are represented in the brain and how these representations influence behavior. Her findings could have profound implications for understanding sensory processing and neural coding in general.

David Anderson, another prominent figure at Caltech, studies the neural mechanisms underlying emotions and behaviors. While much of Anderson’s work now focuses on mice as a model organism, the lab’s research explores how different neural circuits contribute to various emotional states, such as fear, aggression, and pleasure, essentially how emotions are encoded in the circuitry and chemistry of the brain, and how they control animal behavior.ย Using advanced techniques like optogenetics and calcium imaging, Anderson’s lab can manipulate specific neurons and observe the resulting changes in behavior. This work aims to bridge the gap between neural activity and complex emotional behaviors, providing insights into mental health disorders and potential therapeutic targets.

In 2018, the Anderson laboratory identified a cluster of just three neurons in the fly brain that controls a “threat display” โ€” a specific set of behaviors male fruit flies exhibit when facing a male challenger. During a threat display, a fly will extend its wings, make quick, short lunges forward, and continually reorient itself to face the intruder.

California Institute of Technology (Photo: Erik Olsen)

Michael Dickinson is renowned for his studies on the biomechanics and neural control of flight in Drosophila. In the Dickenson Lab, researchers combine behavioral experiments with computational models and robotic simulations, seeking to understand how flies execute complex flight maneuvers with such precision. His work has broader applications in robotics and may inspire new designs for autonomous flying robots.

โ€œHeโ€™s a highly original scientist,โ€ Alexander Borst, a department director at the Max Planck Institute of Neurobiology in Germany, told the New York Times. 

Fruit fly scientific illustration

Dickinson’s investigations also delve into how sensory information is integrated and processed to guide flight behavior, offering insights into the general principles of motor control and sensory integration.

As science advances, Caltech’s Fly Lab’s remind us of the power of curiosity, perseverance, and the endless quest to uncover the mysteries of life. The tiny fruit fly, with its simple elegance, remains a powerful model organism, driving discoveries that illuminate the complexities of biology and behavior. Just recently, scientists (though not at CalTech) unveiled the first fully image of the fruit fly brain. Smaller than a poppy seed, the brain is an astonishingly complex tangle of 140,000 neurons, joined together by more than 490 feet of wiring.

In essence, the fruit fly remains a key to unlocking the wonders and intricacies of life, and in the Fly Labs at Caltech, that spirit of discovery thrives, ensuring that the legacy of Morgan, Lewis, Benzer, and their successors will continue to inspire generations of scientists to come.

California companies lead the effort to save the world with microbes, California connection: meet 2018 Nobel Prize winner in chemistry Frances Arnold, Carnegie Observatories and the GMT, Questioning “Disaster tourism” in California, Feeling the Force in Anaheim and more

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Week of May 31, 2019

Biology

California companies are leading the effort to save the world with microbes

Wikipedia

Overfishing is arguably one of the most significant threats to the human food supply on the planet. Approximately three billion people in the world rely on both wild and farmed seafood as their primary source of protein, and ten percent of the worldโ€™s population depends on fisheries to make a living.

One the of dirty little secrets of the global commercial fish industry is that it takes fish to make fish. While many people see farmed fish as an ideal solution to meeting our protein needs in the future, the reality is that feeding farmed fish right now requires massive inputs of so-called forage fish, namely small fish like anchovies, herring, menhaden, capelin, anchovy, pilchard, sardines, and mackerel that occur in large numbers in the ocean, particularly the cold Southern and Northern latitudes. A multi-billion dollar industry is dedicated to using large ships that ply the ocean with nets to bring up millions of tons of forage fish every year.

So is there a way to feed farmed fish that reduces the need to trawl the seas for forage fish? It turns out that one California company is working on a solution, and it involves one of the most abundant organisms on earth: bacteria.

NovoNutrients is a Mountain View, California, startup, whose offices lie close to both Facebook and Google. The company is harnessing the new technology of synthetic biology or synbio to get bacteria to do our bidding, creating proteins using the same tiny organisms that curdle milk into yogurt and cause innumerable diseases.

California Science Weekly


Chemistry / Nobel Prizes

California connection: meet Frances Arnold, the 2018 Nobel Prize winner in chemistry

CalTech

The 2018 Nobel Prizes, announced in October, included a very special California name: Frances Arnold. Dr. Arnold is a professor of chemical engineering at the California Institute of Technology, an institution that has seen its share of Nobel winners: 39.  She calls La Canada Flintridge home, adding brain power to a city already loaded with brilliant minds (JPL is headquartered there).  

A wonderful profile of Dr. Arnold can be found in this week’s New York Times, written by the always witty and fun Natalie Angier. The piece does an admirable job of explaining directed evolution, the process she developed that is now widely used to generate novel enzymes and other biomolecules by harnessing cellular machinery. Her process is being used to develop biofuels, medicines, agricultural prodiucts and even in laundry detergent to remove stains. 

It is only the 52nd time in history that the Nobel prize was awarded to a female scientist. That’s out of a total of 892 awards (17%) given since the prize was created by Alfred Nobel, the inventor of dynamite, who established the prize in 1895. It should be noted that the brilliant French chemist Marie Curie won it twice. 

The Nobel site also has a wonderful series on women in science that’s worth reading in its entirety. It’s very well illustrated and put together. The piece on Dr. Arnold is particularly good. 

The New York Times   Nobel Prize


Astronomy / Space

Carnegie Observatories and the Giant Magellan Telescope 

Carnegie Observatories

While many science institutions in California are extremely well-known (we cover many of them here), one Pasadena organization gets little media attention, but is arguably one of the most important places in the world in astronomy.  

The Carnegie Observatories, located in Pasadena, is playing a leading role in humanity’s grasp of the origins of the cosmos. Scientists at the Carnegie are working at the Las Campanas Observatory in Chile’s Atacama desert, home to the twin Magellan telescopes, and site of the future Giant Magellan Telescope (GMT).  

The Giant Magellan Telescope is arguably one of the most important astronomic scientific instruments ever constructed. When completed in 2025, it stands to revolutionize our view and understanding of the universe. The GMT is a segmented mirror telescope using seven incredibly precise reflecting surfaces that have been shaped and polished to within a wavelength of light, approximately one-millionth of an inch. It will have a resolving power of almost 25 meters, dwarfing that of most other terrestrial-based telescopes. In fact, it will have ten times the resolution of the Hubble Space Telescope, NASA’s current workhorse for mirror-based astronomical observation. That means it will resolve points of light 10 times sharper than Hubble.

Construction of the Magellan is underway and you can follow its progress here.   
 

Carnegie Observatories


Environment

Questioning “Disaster tourism” in California

San Francisco Chronicle

The 2018 Camp Fire in Paradise, California fire wiped out a small community of mostly retired homeowners who sought out the quiet, forested glens in Northern California as a place to spend the waning years of their lives. The fire is considered the deadliest in California history and resulted in the death of 88 people and the destruction of 13,696 homes.  

The San Francisco Chronicle delves into the idea of “disaster tourism”, following several people who made a special effort to visit the destroyed town to see the damage for themselves, take pictures and video. They were not alone. Apparently, three cleanup workers were fired after posting insensitive images of the devastation on social media. And one artist spray-painted chilling images around Paradise.  

For the people who once called Paradise home, let alone for the relatives of the ones who lost their lives in the tragic fire, the idea of people poking around to gaze, paint and take selfies in the ruins might have distasteful quality. 

San Francisco Chronicle


Space / Companies

Feel the Force in Anaheim

Disney Theme Parks

It was 53 years ago this month that Disneyland delighted (or annoyed, depending on your tolerance for earworms) visitors with the opening of the It’s a Small World ride. Perhaps it’s fitting, or a sign of how much more commercialized the world has become, that this week (Friday, May 31, in fact) saw the opening of Star Wars: Galaxyโ€™s Edge, a new 14-acre addition to the theme park that capitalizes on Disney’s $4 billion, 2012 purchase of the Star Wars franchise from Lucasfilm. The centerpiece of the new addition is a 100-foot long Millennium Falcon.   

The New York Times gets a personalized tour of the new addition, and seemed to think it was both “jaw-dropping” and incomplete, since several of the marquee attractions still aren’t open. In the Los Angeles Times, the reporter both appreciated and questioned how interactive it is, as it forces people who don’t know each other to work together to achieve various goals. 

We can’t help pity the parents who will not only pay nearly $120 per person to enter the park, but will then have to shell out an additional $200 for a hand-built lightsaber. 

New York Times     Los Angeles Times


MORE

Could a drought in California be linked to a drought in the Midwest? A recent Stanford-led study looks at so-called “Domino droughts”. (Stanford Water in the West)

Some lovely shots, recently discovered, of California’s desert landscapes from the 1920s, all shot by two women.  (Atlas Obscura)

A bill making its way through the California legislature will allow “harvesting” of roadkill. With a permit. Didn’t know it was illegal, but apparently, it is.  (CalMatters)

Elephant seals speak in dialects, but they may be losing them. Wow, this is so interesting. Who knew? There are numerous rookeries of elephant seals around California.  (The Atlantic)

The Aquarium of the Pacific in Long Beach has a new wing called Pacific Visions that just opened. (Aquarium of the Pacific)

Hawthorne, California-based SpaceX’s internet-beaming Starlink satellites are totally bumming out astronomers. (Axios)

Saving pets is apparently a big – and expensive – thing near San Francisco. (Alta Online)

Spotting wildfires around California may get easier with an array of new cameras. (NY Times)

The Petersen Automotive Museum in Los Angeles has a new exhibit: โ€˜Hollywood Dream Machinesโ€™ with over 40 vehicles from cinema history, including Blade Runner, A Clockwork Orange, Mad Max: Fury Road, Back to the Future, and RoboCop. (Smith Journal)

Speaking of the Carnegie Observatories (see above) NASAโ€™s Transiting Exoplanets Survey Satellite discovered that a nearby system hosts the first Earth-sized planet. Carnegie scientists were involved in the discovery. (Carnegie Observatories)

A rare (and very smelly) corpse lily is set to bloom in Long Beach. (LA Times)

Excellent story on the decline of the vaquita porpoise, a marine mammal that is almost extinct in the Gulf of California. (Undark)

You may soon get a sandwich delivered to you by drone in San Diego.  (Freight Waves)

That’s it! Have a great week, and please send your friends an invitation to sign up for the California Science Weekly newsletter. 

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